PF21948


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21948, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21948
Description Lipoyl protein ligase A/B catalytic domain

Occurence in the database

PF21948 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1560 FBDBKF_10105 113322 113954 1 lipB lipoyl(octanoyl) transferase LipB Morganella morganii S1
1 group_1796 FBDBKF_13335 44185 45201 -1 lplA Lipoate-protein ligase A Morganella morganii S1
2 group_1560 EHELCC_04905 305287 305919 1 lipB lipoyl(octanoyl) transferase LipB Morganella morganii S2
3 group_1796 EHELCC_08760 229990 231006 1 lplA Lipoate-protein ligase A Morganella morganii S2
4 group_1560 NLDBIP_04905 305083 305715 1 lipB lipoyl(octanoyl) transferase LipB Morganella morganii S4
5 group_1796 NLDBIP_09085 229990 231006 1 lplA Lipoate-protein ligase A Morganella morganii S4
6 group_1796 LHKJJB_05180 26153 27169 -1 lplA Lipoate-protein ligase A Morganella morganii S3
7 group_1560 LHKJJB_13725 29663 30295 -1 lipB lipoyl(octanoyl) transferase LipB Morganella morganii S3
8 group_1796 HKOGLL_05735 214581 215597 1 lplA Lipoate-protein ligase A Morganella morganii S5
9 group_1560 HKOGLL_12810 114103 114735 1 lipB lipoyl(octanoyl) transferase LipB Morganella morganii S5
10 group_1560 F4V73_RS00230 57474 58112 -1 lipB lipoyl(octanoyl) transferase LipB Morganella psychrotolerans
11 group_1796 F4V73_RS03425 730857 731873 1 lipoate--protein ligase A Morganella psychrotolerans
12 group_1560 PMI_RS02075 488471 489115 -1 lipB lipoyl(octanoyl) transferase LipB Proteus mirabilis HI4320
13 group_1796 PMI_RS05110 1115779 1116798 1 lipoate--protein ligase A Proteus mirabilis HI4320