PF21906


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21906, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21906
Description NrtR DNA-binding winged helix domain

Occurence in the database

PF21906 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1275 FBDBKF_07650 42607 43329 -1 nrtR Nudix-related transcriptional regulator NrtR Morganella morganii S1
1 group_1275 EHELCC_13480 16801 17523 -1 nrtR Nudix-related transcriptional regulator NrtR Morganella morganii S2
2 group_1275 NLDBIP_13925 37676 38398 -1 nrtR Nudix-related transcriptional regulator NrtR Morganella morganii S4
3 group_1275 LHKJJB_08925 121351 122073 1 nrtR Nudix-related transcriptional regulator NrtR Morganella morganii S3
4 group_1275 HKOGLL_08475 121351 122073 1 nrtR Nudix-related transcriptional regulator NrtR Morganella morganii S5
5 group_1275 F4V73_RS13470 327415 328137 1 NUDIX domain-containing protein Morganella psychrotolerans
6 group_1275 PMI_RS11850 2618018 2618731 -1 NUDIX domain-containing protein Proteus mirabilis HI4320