PF21239


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21239, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21239
Description Ribosomal RNA large subunit methyltransferase M, N-terminal

Occurence in the database

PF21239 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1073 FBDBKF_06085 41545 42642 -1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Morganella morganii S1
1 group_1073 EHELCC_09130 42117 43214 -1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Morganella morganii S2
2 group_1073 NLDBIP_09510 42117 43214 -1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Morganella morganii S4
3 group_1073 LHKJJB_08245 174024 175121 1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Morganella morganii S3
4 group_1073 HKOGLL_07795 174024 175121 1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Morganella morganii S5
5 group_1073 F4V73_RS15825 171908 173005 1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Morganella psychrotolerans
6 group_1073 PMI_RS11355 2499238 2500335 -1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM Proteus mirabilis HI4320