PF21175


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21175, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21175
Description RecR, C-terminal

Occurence in the database

PF21175 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2133 FBDBKF_16015 56409 57026 1 recR recombination mediator RecR Morganella morganii S1
1 group_2133 EHELCC_18620 13843 14460 1 recR recombination mediator RecR Morganella morganii S2
2 group_2133 NLDBIP_17450 43848 44465 1 recR recombination mediator RecR Morganella morganii S4
3 group_2133 LHKJJB_17210 11723 12340 -1 recR recombination mediator RecR Morganella morganii S3
4 group_2133 HKOGLL_17185 43848 44465 1 recR recombination mediator RecR Morganella morganii S5
5 group_2133 F4V73_RS16295 73206 73823 -1 recR recombination mediator RecR Morganella psychrotolerans
6 group_2133 PMI_RS00680 174944 175549 1 recR recombination mediator RecR Proteus mirabilis HI4320