PF20142


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20142, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20142
Description Scaffold domain

Occurence in the database

PF20142 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1244 FBDBKF_07235 123932 125665 1 ldtD L,D-transpeptidase Morganella morganii S1
1 group_1244 EHELCC_03735 60521 62254 -1 ldtD L,D-transpeptidase Morganella morganii S2
2 group_1244 NLDBIP_03735 60317 62050 -1 ldtD L,D-transpeptidase Morganella morganii S4
3 group_1244 LHKJJB_09565 60431 62164 -1 ldtD L,D-transpeptidase Morganella morganii S3
4 group_1244 HKOGLL_09410 128888 130621 1 ldtD L,D-transpeptidase Morganella morganii S5
5 group_1244 F4V73_RS01420 311910 313664 1 ldtD L,D-transpeptidase Morganella psychrotolerans
6 group_1244 PMI_RS03590 804395 806110 1 ldtD L,D-transpeptidase Proteus mirabilis HI4320