PF19842


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF19842, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF19842
Description YqeC protein

Occurence in the database

PF19842 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2758 FBDBKF_07700 57510 58325 1 yqeC selenium cofactor biosynthesis protein YqeC Morganella morganii S1
1 group_2758 EHELCC_13530 31704 32519 1 yqeC selenium cofactor biosynthesis protein YqeC Morganella morganii S2
2 group_2758 NLDBIP_13975 52579 53394 1 yqeC selenium cofactor biosynthesis protein YqeC Morganella morganii S4
3 group_2758 LHKJJB_08875 106355 107170 -1 yqeC selenium cofactor biosynthesis protein YqeC Morganella morganii S3
4 group_2758 HKOGLL_08425 106355 107170 -1 yqeC selenium cofactor biosynthesis protein YqeC Morganella morganii S5
5 group_2758 F4V73_RS13400 310216 311031 -1 yqeC selenium cofactor biosynthesis protein YqeC Morganella psychrotolerans