PF19269


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF19269, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF19269
Description Anticodon binding domain

Occurence in the database

PF19269 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1675 FBDBKF_11650 123559 124974 -1 gltX glutamate--tRNA ligase Morganella morganii S1
1 group_1675 EHELCC_17570 21902 23317 -1 gltX glutamate--tRNA ligase Morganella morganii S2
2 group_1675 NLDBIP_18780 22649 24064 -1 gltX glutamate--tRNA ligase Morganella morganii S4
3 group_1675 LHKJJB_18010 21902 23317 -1 gltX glutamate--tRNA ligase Morganella morganii S3
4 group_1675 HKOGLL_18640 914 2329 1 gltX glutamate--tRNA ligase Morganella morganii S5
5 group_1675 F4V73_RS08030 1668614 1670029 1 gltX glutamate--tRNA ligase Morganella psychrotolerans
6 group_1675 PMI_RS08960 1955083 1956501 1 gltX glutamate--tRNA ligase Proteus mirabilis HI4320