PF18317


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18317, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18317
Description Shikimate 5'-dehydrogenase C-terminal domain

Occurence in the database

PF18317 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2362 FBDBKF_19060 1174 1992 -1 aroE shikimate dehydrogenase Morganella morganii S1
1 group_2362 EHELCC_18805 1174 1992 -1 aroE shikimate dehydrogenase Morganella morganii S2
2 group_2362 NLDBIP_18820 1174 1992 -1 aroE shikimate dehydrogenase Morganella morganii S4
3 group_2362 LHKJJB_18675 1174 1992 -1 aroE shikimate dehydrogenase Morganella morganii S3
4 group_2362 HKOGLL_18410 1174 1992 -1 aroE shikimate dehydrogenase Morganella morganii S5
5 group_2362 F4V73_RS19105 28682 29497 1 aroE shikimate dehydrogenase Morganella psychrotolerans
6 group_2362 PMI_RS16330 3604307 3605131 1 aroE shikimate dehydrogenase Proteus mirabilis HI4320