PF18267


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18267, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18267
Description Rubredoxin NAD+ reductase C-terminal domain

Occurence in the database

PF18267 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1270 FBDBKF_07505 13599 16139 -1 nirB NAD(P)H-nitrite reductase, large subunit Morganella morganii S1
1 group_1270 EHELCC_17175 41249 43789 -1 nirB NAD(P)H-nitrite reductase, large subunit Morganella morganii S2
2 group_1270 NLDBIP_13780 8668 11208 -1 nirB NAD(P)H-nitrite reductase, large subunit Morganella morganii S4
3 group_1270 LHKJJB_09070 148541 151081 1 nirB NAD(P)H-nitrite reductase, large subunit Morganella morganii S3
4 group_1270 HKOGLL_08620 148541 151081 1 nirB NAD(P)H-nitrite reductase, large subunit Morganella morganii S5
5 group_1270 F4V73_RS13605 354373 356913 1 nirB nitrite reductase large subunit NirB Morganella psychrotolerans
6 group_1270 PMI_RS07160 1564568 1567114 -1 nirB nitrite reductase large subunit NirB Proteus mirabilis HI4320