PF18053


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18053, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18053
Description DNA gyrase B subunit insert domain

Occurence in the database

PF18053 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2080 FBDBKF_15570 42436 44850 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S1
1 group_2080 EHELCC_15930 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S2
2 group_2080 NLDBIP_16440 36513 38927 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S4
3 group_2080 LHKJJB_16365 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S3
4 group_2080 HKOGLL_16135 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S5
5 group_2080 F4V73_RS17590 153193 155607 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella psychrotolerans
6 group_2080 PMI_RS15515 3449449 3451863 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Proteus mirabilis HI4320