PF17969


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17969, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17969
Description L,D-transpeptidase C-terminal domain

Occurence in the database

PF17969 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1029 FBDBKF_05800 162514 163596 -1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S1
1 group_1029 EHELCC_11790 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S2
2 group_1029 NLDBIP_12130 17853 18935 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S4
3 group_1029 LHKJJB_11990 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S3
4 group_1029 HKOGLL_10605 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S5
5 group_1029 F4V73_RS03525 753880 754965 1 L,D-transpeptidase family protein Morganella psychrotolerans
6 group_1029 PMI_RS06820 1489083 1490000 -1 L,D-transpeptidase family protein Proteus mirabilis HI4320