PF17293


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17293, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17293
Description Arm DNA-binding domain

Occurence in the database

PF17293 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3453 FBDBKF_15610 53231 54400 1 xerC Tyrosine recombinase XerC Morganella morganii S1
1 group_3453 EHELCC_15970 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S2
2 group_3453 NLDBIP_16400 26963 28132 -1 xerC Tyrosine recombinase XerC Morganella morganii S4
3 group_3453 LHKJJB_16405 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S3
4 group_3453 HKOGLL_16175 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S5