PF16970


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16970, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16970
Description Type-1 fimbrial protein, A

Occurence in the database

PF16970 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_414 FBDBKF_17985 35692 36102 -1 Fimbrial protein Morganella morganii S1
1 group_414 EHELCC_06350 274 684 1 Fimbrial protein Morganella morganii S2
2 group_414 NLDBIP_06670 147 557 1 Fimbrial protein Morganella morganii S4
3 group_414 LHKJJB_19270 58 468 1 Fimbrial protein Morganella morganii S3
4 group_414 HKOGLL_04720 269084 269494 -1 Fimbrial protein Morganella morganii S5
5 group_414 PMI_RS02650 579491 580036 -1 ucaA uroepithelial cell adherence major pilin UcaA Proteus mirabilis HI4320
6 group_414 PMI_RS12930 2869343 2869753 -1 fimbrial protein Proteus mirabilis HI4320