PF16881


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16881, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16881
Description N-terminal domain of lipoyl synthase of Radical_SAM family

Occurence in the database

PF16881 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1561 FBDBKF_10110 114086 115051 1 lipA lipoyl synthase Morganella morganii S1
1 group_1561 EHELCC_04910 306051 307016 1 lipA lipoyl synthase Morganella morganii S2
2 group_1561 NLDBIP_04910 305847 306812 1 lipA lipoyl synthase Morganella morganii S4
3 group_1561 LHKJJB_13720 28566 29531 -1 lipA lipoyl synthase Morganella morganii S3
4 group_1561 HKOGLL_12815 114867 115832 1 lipA lipoyl synthase Morganella morganii S5
5 group_1561 F4V73_RS00225 56394 57359 -1 lipA lipoyl synthase Morganella psychrotolerans
6 group_1561 PMI_RS02070 487404 488369 -1 lipA lipoyl synthase Proteus mirabilis HI4320