PF16360


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16360, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16360
Description GTP-binding GTPase Middle Region

Occurence in the database

PF16360 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1366 FBDBKF_08460 71923 73203 1 hflX ribosome rescue GTPase HflX Morganella morganii S1
1 group_1366 EHELCC_13065 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S2
2 group_1366 NLDBIP_13405 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S4
3 group_1366 LHKJJB_13150 70641 71921 1 hflX ribosome rescue GTPase HflX Morganella morganii S3
4 group_1366 HKOGLL_11880 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S5
5 group_1366 F4V73_RS09680 38138 39418 1 hflX ribosome rescue GTPase HflX Morganella psychrotolerans
6 group_1366 PMI_RS16755 3693000 3694283 1 hflX GTPase HflX Proteus mirabilis HI4320