PF16220


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16220, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16220
Description Domain of unknown function (DUF4880)

Occurence in the database

PF16220 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2308 FBDBKF_17725 1727 2689 1 fecR Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport Morganella morganii S1
1 group_2308 EHELCC_09750 181159 182121 1 fecR Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport Morganella morganii S2
2 group_2308 NLDBIP_10130 181159 182121 1 fecR Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport Morganella morganii S4
3 group_2308 LHKJJB_07625 35117 36079 -1 fecR Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport Morganella morganii S3
4 group_2308 HKOGLL_07175 35117 36079 -1 fecR Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport Morganella morganii S5
5 group_2308 F4V73_RS15235 32697 33662 -1 FecR domain-containing protein Morganella psychrotolerans
6 group_2308 PMI_RS18445 4050572 4051585 -1 FecR domain-containing protein Proteus mirabilis HI4320