PF14579


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF14579, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF14579
Description Helix-hairpin-helix motif

Occurence in the database

PF14579 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_279 FBDBKF_05935 10313 13792 -1 dnaE DNA polymerase III subunit alpha Morganella morganii S1
1 group_279 EHELCC_08980 10885 14364 -1 dnaE DNA polymerase III subunit alpha Morganella morganii S2
2 group_279 NLDBIP_09360 10885 14364 -1 dnaE DNA polymerase III subunit alpha Morganella morganii S4
3 group_279 LHKJJB_08395 202874 206353 1 dnaE DNA polymerase III subunit alpha Morganella morganii S3
4 group_279 HKOGLL_07945 202874 206353 1 dnaE DNA polymerase III subunit alpha Morganella morganii S5
5 group_279 F4V73_RS15960 199662 203141 1 dnaE DNA polymerase III subunit alpha Morganella psychrotolerans
6 group_279 F4V73_RS18015 43726 47259 -1 dnaE DNA polymerase III subunit alpha Morganella psychrotolerans
7 group_279 PMI_RS11210 2465806 2469288 -1 dnaE DNA polymerase III subunit alpha Proteus mirabilis HI4320