Orthogroup:group_254


Homologs in group_254

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_03785 FBDBKF_03785 Morganella morganii S1 purB Adenylosuccinate lyase
EHELCC_06750 EHELCC_06750 Morganella morganii S2 purB Adenylosuccinate lyase
NLDBIP_07075 NLDBIP_07075 Morganella morganii S4 purB Adenylosuccinate lyase
LHKJJB_06610 LHKJJB_06610 Morganella morganii S3 purB Adenylosuccinate lyase
HKOGLL_04320 HKOGLL_04320 Morganella morganii S5 purB Adenylosuccinate lyase
F4V73_RS11085 F4V73_RS11085 Morganella psychrotolerans - adenylosuccinate lyase family protein
PMI_RS03090 PMI_RS03090 Proteus mirabilis HI4320 purB adenylosuccinate lyase
PMI_RS14740 PMI_RS14740 Proteus mirabilis HI4320 - adenylosuccinate lyase family protein

Distribution of group_254 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_254 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_254

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_254.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 purB 6
2 - 2

Product

# Product Occurence
1 Adenylosuccinate lyase 5
2 adenylosuccinate lyase family protein 2
3 adenylosuccinate lyase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0015 8 F Nucleotide transport and metabolism (F) Adenylosuccinate lyase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01857 1 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] Benzoate degradation
Metabolic pathways
Microbial metabolism in diverse environments
Degradation of aromatic compounds		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00206 8 Lyase
PF10397 8 Adenylosuccinate lyase C-terminus

Annotations of the 640 SwissProt hits

Annotation Number of occurrences
3-carboxy-cis,cis-muconate cycloisomerase 3
3-carboxy-cis,cis-muconate cycloisomerase (Fragment) 1
Adenylosuccinate lyase 46
Argininosuccinate lyase 483
Argininosuccinate lyase (Fragment) 1
Argininosuccinate lyase 1 5
Argininosuccinate lyase 2 4
Aspartate ammonia-lyase 6
Bifunctional protein ArgH 4
Bifunctional protein ArgHA 1
Bifunctional protein ArgHA (Fragment) 1
Fumarate hydratase 2 1
Fumarate hydratase class II 65
Fumarate hydratase class II 1 2
Fumarate hydratase, mitochondrial 10
N-acetyl-S-(2-succino)cysteine lyase 2
Nitrosuccinate lyase 2
Probable fumarate hydratase, mitochondrial 1
Trans-aconitate decarboxylase 1 1
Uncharacterized protein C8E4.05c 1

Protein length

Min length 455
Max length 456
Mean length (sd) 455.9 (0.4)
Median length 456.0

Protein length distribution