PF13899


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13899, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13899
Description Thioredoxin-like

Occurence in the database

PF13899 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1544 FBDBKF_10005 93537 95573 -1 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains Morganella morganii S1
1 group_1544 EHELCC_04805 285502 287538 -1 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains Morganella morganii S2
2 group_1544 NLDBIP_04805 285298 287334 -1 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains Morganella morganii S4
3 group_1544 LHKJJB_13825 48044 50080 1 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains Morganella morganii S3
4 group_1544 HKOGLL_12710 94318 96354 -1 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains Morganella morganii S5
5 group_1544 F4V73_RS00330 76189 78219 1 protein-disulfide reductase DsbD family protein Morganella psychrotolerans
6 group_1544 PMI_RS02165 506477 508513 1 protein-disulfide reductase DsbD family protein Proteus mirabilis HI4320