PF13682


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13682, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13682
Description Chemoreceptor zinc-binding domain

Occurence in the database

PF13682 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1445 FBDBKF_09190 67786 68847 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
1 group_1445 EHELCC_10220 77257 78318 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
2 group_1445 NLDBIP_10565 55528 56589 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
3 group_1445 LHKJJB_10790 134939 136000 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
4 group_1445 HKOGLL_13850 68240 69301 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
5 group_1445 F4V73_RS10780 287454 288539 1 methyl-accepting chemotaxis protein Morganella psychrotolerans
6 group_1445 PMI_RS13160 2921858 2922784 -1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320