PF13558


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13558, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13558
Description SbcC/RAD50-like, Walker B motif

Occurence in the database

PF13558 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1241 FBDBKF_07220 117204 121691 1 mukB chromosome partition protein MukB Morganella morganii S1
1 group_2269 FBDBKF_17445 20887 24573 1 sbcC exonuclease subunit SbcC Morganella morganii S1
2 group_1241 EHELCC_03750 64495 68982 -1 mukB chromosome partition protein MukB Morganella morganii S2
3 group_2269 EHELCC_17340 20887 24573 1 sbcC exonuclease subunit SbcC Morganella morganii S2
4 group_1241 NLDBIP_03750 64291 68778 -1 mukB chromosome partition protein MukB Morganella morganii S4
5 group_2269 NLDBIP_17855 18223 21909 -1 sbcC exonuclease subunit SbcC Morganella morganii S4
6 group_1241 LHKJJB_09580 64405 68892 -1 mukB chromosome partition protein MukB Morganella morganii S3
7 group_2269 LHKJJB_17775 18221 21907 -1 sbcC exonuclease subunit SbcC Morganella morganii S3
8 group_1241 HKOGLL_09395 122160 126647 1 mukB chromosome partition protein MukB Morganella morganii S5
9 group_2269 HKOGLL_17785 18221 21907 -1 sbcC exonuclease subunit SbcC Morganella morganii S5
10 group_1241 F4V73_RS01405 305492 309976 1 mukB chromosome partition protein MukB Morganella psychrotolerans
11 group_2269 F4V73_RS16620 144548 148234 1 SbcC/MukB-like Walker B domain-containing protein Morganella psychrotolerans
12 group_2269 PMI_RS00240 73768 77493 -1 AAA family ATPase Proteus mirabilis HI4320
13 group_1241 PMI_RS03575 797533 801990 1 mukB chromosome partition protein MukB Proteus mirabilis HI4320