PF13481


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13481, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13481
Description AAA domain

Occurence in the database

PF13481 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1152 FBDBKF_06600 161249 162637 -1 radA DNA repair protein RadA Morganella morganii S1
1 group_3776 FBDBKF_20190 9048 9887 1 repA Regulatory protein RepA Morganella morganii S1
2 group_1152 EHELCC_09645 161821 163209 -1 radA DNA repair protein RadA Morganella morganii S2
3 group_1152 NLDBIP_10025 161821 163209 -1 radA DNA repair protein RadA Morganella morganii S4
4 group_1152 LHKJJB_07730 54029 55417 1 radA DNA repair protein RadA Morganella morganii S3
5 group_1152 HKOGLL_07280 54029 55417 1 radA DNA repair protein RadA Morganella morganii S5
6 group_3776 F4V73_RS19475 131652 132719 -1 helicase RepA family protein Morganella psychrotolerans
7 group_1152 F4V73_RS15345 52540 53931 1 radA DNA repair protein RadA Morganella psychrotolerans
8 group_1152 PMI_RS12385 2745908 2747299 -1 radA DNA repair protein RadA Proteus mirabilis HI4320