PF13428


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13428, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13428
Description Tetratricopeptide repeat

Occurence in the database

PF13428 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_513 FBDBKF_01065 194305 194655 -1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S1
1 group_513 EHELCC_00480 114213 114563 1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S2
2 group_513 NLDBIP_02980 565573 565923 -1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S4
3 group_513 LHKJJB_04495 172814 173164 -1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S3
4 group_513 HKOGLL_02550 114418 114768 1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S5