PF13384


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13384, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13384
Description Homeodomain-like domain

Occurence in the database

PF13384 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_891 FBDBKF_04655 129967 130953 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S1
1 group_891 EHELCC_05945 189424 190410 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S2
2 group_891 NLDBIP_06265 230489 231475 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S4
3 group_891 LHKJJB_03145 208013 208999 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S3
4 group_891 HKOGLL_06620 129877 130863 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S5
5 group_891 F4V73_RS09105 1903722 1904708 -1 sugar-binding transcriptional regulator Morganella psychrotolerans