PF13193


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13193, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 17 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13193
Description AMP-binding enzyme C-terminal domain

Occurence in the database

PF13193 is associated with 17 different proteins (see tab "Protein list" and "Profile")
The 17 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_242 FBDBKF_02225 135644 137335 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S1
1 group_334 FBDBKF_10485 52763 54718 1 acs acetate--CoA ligase Morganella morganii S1
2 group_242 EHELCC_02695 523464 525155 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S2
3 group_334 EHELCC_14820 52753 54708 1 acs acetate--CoA ligase Morganella morganii S2
4 group_242 NLDBIP_00765 154981 156672 -1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S4
5 group_334 NLDBIP_14650 52753 54708 1 acs acetate--CoA ligase Morganella morganii S4
6 group_242 LHKJJB_01270 236013 237704 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S3
7 group_334 LHKJJB_14695 87018 88973 -1 acs acetate--CoA ligase Morganella morganii S3
8 group_242 HKOGLL_01310 241524 243215 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S5
9 group_334 HKOGLL_13315 87018 88973 -1 acs acetate--CoA ligase Morganella morganii S5
10 group_1881 F4V73_RS02870 607893 609287 1 menE o-succinylbenzoate--CoA ligase Morganella psychrotolerans
11 group_242 F4V73_RS04595 972360 974051 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella psychrotolerans
12 group_334 F4V73_RS11965 546943 548283 1 AMP-binding protein Morganella psychrotolerans
13 group_334 F4V73_RS14195 54624 56579 1 acs acetate--CoA ligase Morganella psychrotolerans
14 group_242 PMI_RS05625 1226739 1228427 1 fadD long-chain-fatty-acid--CoA ligase FadD Proteus mirabilis HI4320
15 group_242 PMI_RS13090 2906571 2908127 1 caiC crotonobetaine/carnitine-CoA ligase Proteus mirabilis HI4320
16 group_334 PMI_RS15025 3332999 3334957 1 acs acetate--CoA ligase Proteus mirabilis HI4320