PF13184


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13184, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13184
Description NusA-like KH domain

Occurence in the database

PF13184 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1403 FBDBKF_08665 112896 114407 1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S1
1 group_1403 EHELCC_12860 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S2
2 group_1403 NLDBIP_13200 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S4
3 group_1403 LHKJJB_13355 111614 113125 1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S3
4 group_1403 HKOGLL_11675 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S5
5 group_1403 F4V73_RS09890 80059 81570 1 nusA transcription termination factor NusA Morganella psychrotolerans
6 group_1403 PMI_RS17020 3743179 3744687 1 nusA transcription termination factor NusA Proteus mirabilis HI4320