PF13116


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13116, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13116
Description Protein of unknown function

Occurence in the database

PF13116 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_747 FBDBKF_03325 63635 67414 -1 yhdP AsmA2 domain-containing protein YhdP Morganella morganii S1
1 group_747 EHELCC_07210 179689 183468 1 yhdP AsmA2 domain-containing protein YhdP Morganella morganii S2
2 group_747 NLDBIP_07535 179562 183341 1 yhdP AsmA2 domain-containing protein YhdP Morganella morganii S4
3 group_747 LHKJJB_07070 143308 147087 1 yhdP AsmA2 domain-containing protein YhdP Morganella morganii S3
4 group_747 HKOGLL_03860 86300 90079 -1 yhdP AsmA2 domain-containing protein YhdP Morganella morganii S5
5 group_747 F4V73_RS11610 472542 476315 1 yhdP AsmA2 domain-containing protein YhdP Morganella psychrotolerans
6 group_747 PMI_RS18090 3973304 3977107 1 yhdP AsmA2 domain-containing protein YhdP Proteus mirabilis HI4320