PF12883


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12883, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12883
Description Protein of unknown function (DUF3828)

Occurence in the database

PF12883 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2561 FBDBKF_02670 230740 231267 -1 DUF3828 domain-containing protein Morganella morganii S1
1 group_2561 EHELCC_03140 618560 619087 -1 DUF3828 domain-containing protein Morganella morganii S2
2 group_2561 NLDBIP_00320 61049 61576 1 DUF3828 domain-containing protein Morganella morganii S4
3 group_2561 LHKJJB_01715 331109 331636 -1 DUF3828 domain-containing protein Morganella morganii S3
4 group_2561 HKOGLL_01755 336620 337147 -1 DUF3828 domain-containing protein Morganella morganii S5
5 group_2561 F4V73_RS05170 1101754 1102281 -1 DUF3828 domain-containing protein Morganella psychrotolerans