PF12870


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12870, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12870
Description Domain of unknown function (DUF4878)

Occurence in the database

PF12870 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1841 FBDBKF_13745 42039 42440 1 DUF4878 domain-containing protein Morganella morganii S1
1 group_1841 EHELCC_11415 126915 127316 1 DUF4878 domain-containing protein Morganella morganii S2
2 group_1841 NLDBIP_11760 126915 127316 1 DUF4878 domain-containing protein Morganella morganii S4
3 group_1841 LHKJJB_11620 126915 127316 1 DUF4878 domain-containing protein Morganella morganii S3
4 group_1841 HKOGLL_10230 126915 127316 1 DUF4878 domain-containing protein Morganella morganii S5
5 group_1841 F4V73_RS12615 119877 120278 1 DUF4878 domain-containing protein Morganella psychrotolerans
6 group_1841 PMI_RS07465 1628785 1629192 -1 DUF4878 domain-containing protein Proteus mirabilis HI4320