PF12843


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12843, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12843
Description Putative quorum-sensing-regulated virulence factor

Occurence in the database

PF12843 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1672 FBDBKF_11625 121646 121867 1 DUF3820 domain-containing protein Morganella morganii S1
1 group_1672 EHELCC_17545 19989 20210 1 DUF3820 domain-containing protein Morganella morganii S2
2 group_1672 NLDBIP_18755 20736 20957 1 DUF3820 domain-containing protein Morganella morganii S4
3 group_1672 LHKJJB_17985 19989 20210 1 DUF3820 domain-containing protein Morganella morganii S3
4 group_1672 HKOGLL_18665 4021 4242 -1 DUF3820 domain-containing protein Morganella morganii S5
5 group_1672 F4V73_RS08055 1671768 1671989 -1 DUF3820 family protein Morganella psychrotolerans
6 group_1672 PMI_RS08985 1958278 1958499 -1 DUF3820 family protein Proteus mirabilis HI4320