PF12840


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12840, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12840
Description Helix-turn-helix domain

Occurence in the database

PF12840 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_94 FBDBKF_10890 6971 7666 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S1
1 group_94 EHELCC_05335 51802 52497 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S2
2 group_94 NLDBIP_05655 92867 93562 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S4
3 group_94 LHKJJB_02535 70391 71086 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S3
4 group_94 HKOGLL_15915 93831 94526 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S5