PF12834


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12834, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12834
Description Phage integrase, N-terminal

Occurence in the database

PF12834 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_812 FBDBKF_03910 180962 181870 -1 Core-binding (CB) domain-containing protein Morganella morganii S1
1 group_812 EHELCC_06625 65233 66141 1 Core-binding (CB) domain-containing protein Morganella morganii S2
2 group_812 NLDBIP_06950 65106 66014 1 Core-binding (CB) domain-containing protein Morganella morganii S4
3 group_812 LHKJJB_06485 28852 29760 1 Core-binding (CB) domain-containing protein Morganella morganii S3
4 group_812 HKOGLL_04445 203627 204535 -1 Core-binding (CB) domain-containing protein Morganella morganii S5
5 group_812 F4V73_RS10125 134267 135145 -1 integrase domain-containing protein Morganella psychrotolerans
6 group_812 PMI_RS12670 2803886 2804794 -1 integrase domain-containing protein Proteus mirabilis HI4320