PF12793


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12793, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12793
Description Sugar transport-related sRNA regulator N-term

Occurence in the database

PF12793 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_873 FBDBKF_04430 79654 81318 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S1
1 group_873 EHELCC_05720 139111 140775 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S2
2 group_873 NLDBIP_06040 180176 181840 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S4
3 group_873 LHKJJB_02920 157700 159364 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S3
4 group_873 HKOGLL_06395 79564 81228 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S5
5 group_873 F4V73_RS08875 1840913 1842577 1 sgrR HTH-type transcriptional regulator SgrR Morganella psychrotolerans
6 group_873 PMI_RS10285 2255359 2257038 1 sgrR HTH-type transcriptional regulator SgrR Proteus mirabilis HI4320