PF12684


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12684, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12684
Description PDDEXK-like domain of unknown function (DUF3799)

Occurence in the database

PF12684 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2339 FBDBKF_18540 28190 29887 1 Exodeoxyribonuclease VIII Morganella morganii S1
1 group_2339 EHELCC_01845 357954 359651 -1 Exodeoxyribonuclease VIII Morganella morganii S2
2 group_2339 NLDBIP_01615 320485 322182 1 Exodeoxyribonuclease VIII Morganella morganii S4
3 group_2339 LHKJJB_00420 70503 72200 -1 Exodeoxyribonuclease VIII Morganella morganii S3
4 group_2339 HKOGLL_00460 76014 77711 -1 Exodeoxyribonuclease VIII Morganella morganii S5
5 group_2339 F4V73_RS06300 1313511 1314323 1 PD-(D/E)XK nuclease-like domain-containing protein Morganella psychrotolerans
6 group_2339 PMI_RS02330 532219 533037 -1 PD-(D/E)XK nuclease-like domain-containing protein Proteus mirabilis HI4320