Homologs in group_2339

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18540 FBDBKF_18540 31.0 Morganella morganii S1 - Exodeoxyribonuclease VIII
EHELCC_01845 EHELCC_01845 31.0 Morganella morganii S2 - Exodeoxyribonuclease VIII
NLDBIP_01615 NLDBIP_01615 31.0 Morganella morganii S4 - Exodeoxyribonuclease VIII
LHKJJB_00420 LHKJJB_00420 31.0 Morganella morganii S3 - Exodeoxyribonuclease VIII
HKOGLL_00460 HKOGLL_00460 31.0 Morganella morganii S5 - Exodeoxyribonuclease VIII
PMI_RS02330 PMI_RS02330 56.7 Proteus mirabilis HI4320 - PD-(D/E)XK nuclease-like domain-containing protein

Distribution of the homologs in the orthogroup group_2339

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2339

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15032 9.21e-95 300 51 0 267 1 recE Exodeoxyribonuclease 8 Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06300
Feature type CDS
Gene -
Product PD-(D/E)XK nuclease-like domain-containing protein
Location 1313511 - 1314323 (strand: 1)
Length 813 (nucleotides) / 270 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2339
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12684 PDDEXK-like domain of unknown function (DUF3799)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10906 exodeoxyribonuclease VIII [EC:3.1.11.-] - -

Protein Sequence

METGIFYGLSNEDYHQGSGVSKSQLDDIAKNPAVYQWRKKAPVDEEKLKALDMGTALHCLLLEPDEFDSRFIEAPEFNRRTNQGKEDEKEFLKSCESTGKIVIDYEQHRKLKIMRDSAMAHHAARYFLEADGYSEASIYWNDTDVDELCRIRPDKFLSNQPVIIDVKKVADMERFPRHIEEFRYHVQHAMYQEGYLRHFGESPVFLFIAVSETIDCGRYPVHVFELDSEDVDVGFNLFKKNLQTFHECRVNDDWGGIEPISRPEWARRKN

Flanking regions ( +/- flanking 50bp)

CGAAGTCAGGAAGGCAATCGAAACCACACTCAGAAAACGGAGCATGCTGCATGGAAACGGGAATATTTTACGGGCTTAGTAACGAGGACTATCACCAGGGATCAGGTGTTAGTAAATCCCAGCTCGACGATATAGCAAAAAACCCTGCTGTTTATCAGTGGCGTAAAAAAGCACCGGTTGATGAAGAGAAATTAAAGGCTCTGGATATGGGAACCGCCCTGCACTGCCTTTTGCTTGAGCCTGATGAGTTCGATAGCCGGTTCATTGAAGCGCCTGAGTTTAACCGCAGAACGAACCAAGGGAAGGAAGACGAAAAGGAATTTCTGAAATCGTGCGAAAGCACAGGGAAGATCGTAATAGATTACGAACAGCACCGGAAGCTGAAGATCATGAGAGACAGCGCAATGGCTCATCACGCCGCCAGATATTTCCTTGAGGCGGACGGGTATAGCGAGGCGTCAATTTACTGGAACGACACGGATGTTGATGAGTTATGCAGGATCAGACCCGATAAGTTTTTATCAAATCAGCCGGTGATCATCGATGTAAAAAAAGTCGCAGACATGGAGCGTTTTCCGCGGCACATCGAAGAATTTCGCTATCACGTACAGCACGCAATGTATCAGGAAGGTTATTTGCGTCACTTTGGTGAATCACCCGTTTTTTTATTTATCGCTGTCAGCGAAACCATCGACTGCGGTCGCTACCCTGTCCATGTTTTTGAGCTTGATTCTGAAGACGTCGACGTCGGGTTTAATTTATTCAAAAAAAACCTGCAAACCTTTCATGAGTGTCGCGTCAATGATGATTGGGGCGGCATAGAACCAATATCGCGCCCCGAGTGGGCAAGAAGGAAAAATTAATATGTCACAGGAAATAACGACAATTGATGTCGATCGCGAAGCTGACACAT