PF12462


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12462, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12462
Description DNA helicase IV / RNA helicase N terminal

Occurence in the database

PF12462 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1262 FBDBKF_07360 157341 159395 1 helD DNA helicase IV Morganella morganii S1
1 group_1262 EHELCC_03610 26791 28845 -1 helD DNA helicase IV Morganella morganii S2
2 group_1262 NLDBIP_03610 26587 28641 -1 helD DNA helicase IV Morganella morganii S4
3 group_1262 LHKJJB_09440 26701 28755 -1 helD DNA helicase IV Morganella morganii S3
4 group_1262 HKOGLL_09535 162297 164351 1 helD DNA helicase IV Morganella morganii S5
5 group_1262 F4V73_RS01545 345816 347870 1 helD DNA helicase IV Morganella psychrotolerans
6 group_1262 PMI_RS03875 878588 880639 1 helD DNA helicase IV Proteus mirabilis HI4320