PF12390


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12390, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12390
Description Selenocysteine synthase N terminal

Occurence in the database

PF12390 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2148 FBDBKF_16140 18396 19778 1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S1
1 group_2148 EHELCC_16175 18396 19778 1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S2
2 group_2148 NLDBIP_17165 42392 43774 -1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S4
3 group_2148 LHKJJB_17085 45494 46876 -1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S3
4 group_2148 HKOGLL_16755 18396 19778 1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S5
5 group_2148 F4V73_RS17475 126409 127791 -1 selA L-seryl-tRNA(Sec) selenium transferase Morganella psychrotolerans
6 group_2148 PMI_RS15375 3415894 3417285 -1 selA L-seryl-tRNA(Sec) selenium transferase Proteus mirabilis HI4320