PF12168


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12168, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12168
Description DNA polymerase III subunits tau domain IV DnaB-binding

Occurence in the database

PF12168 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2131 FBDBKF_16005 54104 56035 1 dnaX DNA polymerase III subunit gamma/tau Morganella morganii S1
1 group_2131 EHELCC_18610 11538 13469 1 dnaX DNA polymerase III subunit gamma/tau Morganella morganii S2
2 group_2131 NLDBIP_17440 41543 43474 1 dnaX DNA polymerase III subunit gamma/tau Morganella morganii S4
3 group_2131 LHKJJB_17220 12714 14645 -1 dnaX DNA polymerase III subunit gamma/tau Morganella morganii S3
4 group_2131 HKOGLL_17175 41543 43474 1 dnaX DNA polymerase III subunit gamma/tau Morganella morganii S5
5 group_2131 F4V73_RS16305 74197 76140 -1 dnaX DNA polymerase III subunit gamma/tau Morganella psychrotolerans
6 group_2131 PMI_RS00670 172584 174560 1 dnaX DNA polymerase III subunit gamma/tau Proteus mirabilis HI4320