PF12002


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12002, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12002
Description MgsA AAA+ ATPase C terminal

Occurence in the database

PF12002 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1222 FBDBKF_07110 89861 91204 1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S1
1 group_1222 EHELCC_03860 94982 96325 -1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S2
2 group_1222 NLDBIP_03860 94778 96121 -1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S4
3 group_1222 LHKJJB_09690 94892 96235 -1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S3
4 group_1222 HKOGLL_09285 94817 96160 1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S5
5 group_1222 F4V73_RS01295 277729 279072 1 replication-associated recombination protein A Morganella psychrotolerans
6 group_1222 PMI_RS03440 763150 764499 1 replication-associated recombination protein A Proteus mirabilis HI4320