PF11890


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11890, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11890
Description Domain of unknown function (DUF3410)

Occurence in the database

PF11890 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1918 FBDBKF_14275 54315 55460 -1 pdxB 4-phosphoerythronate dehydrogenase PdxB Morganella morganii S1
1 group_1918 EHELCC_08005 61525 62670 1 pdxB 4-phosphoerythronate dehydrogenase PdxB Morganella morganii S2
2 group_1918 NLDBIP_08330 61525 62670 1 pdxB 4-phosphoerythronate dehydrogenase PdxB Morganella morganii S4
3 group_1918 LHKJJB_05935 194489 195634 -1 pdxB 4-phosphoerythronate dehydrogenase PdxB Morganella morganii S3
4 group_1918 HKOGLL_04980 46116 47261 1 pdxB 4-phosphoerythronate dehydrogenase PdxB Morganella morganii S5
5 group_1918 F4V73_RS02635 555045 556175 1 pdxB 4-phosphoerythronate dehydrogenase PdxB Morganella psychrotolerans
6 group_1918 PMI_RS08785 1920895 1922022 -1 pdxB 4-phosphoerythronate dehydrogenase PdxB Proteus mirabilis HI4320