PF11873


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11873, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11873
Description Membrane-bound lytic murein transglycosylase C, N-terminal domain

Occurence in the database

PF11873 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1989 FBDBKF_14985 9321 10436 -1 mltC membrane-bound lytic murein transglycosylase MltC Morganella morganii S1
1 group_1989 EHELCC_11260 74470 75585 1 mltC membrane-bound lytic murein transglycosylase MltC Morganella morganii S2
2 group_1989 NLDBIP_11605 74470 75585 1 mltC membrane-bound lytic murein transglycosylase MltC Morganella morganii S4
3 group_1989 LHKJJB_11465 74470 75585 1 mltC membrane-bound lytic murein transglycosylase MltC Morganella morganii S3
4 group_1989 HKOGLL_10075 74470 75585 1 mltC membrane-bound lytic murein transglycosylase MltC Morganella morganii S5
5 group_1989 F4V73_RS12465 75343 76419 1 mltC membrane-bound lytic murein transglycosylase MltC Morganella psychrotolerans
6 group_1989 PMI_RS01545 376247 377317 -1 mltC membrane-bound lytic murein transglycosylase MltC Proteus mirabilis HI4320