PF10415


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF10415, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF10415
Description Fumarase C C-terminus

Occurence in the database

PF10415 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_808 FBDBKF_03815 167109 168533 1 aspA aspartate ammonia-lyase Morganella morganii S1
1 group_920 FBDBKF_04990 1882 3276 -1 fumC class II fumarate hydratase Morganella morganii S1
2 group_808 EHELCC_06720 78570 79994 -1 aspA aspartate ammonia-lyase Morganella morganii S2
3 group_920 EHELCC_12600 178218 179612 1 fumC class II fumarate hydratase Morganella morganii S2
4 group_808 NLDBIP_07045 78443 79867 -1 aspA aspartate ammonia-lyase Morganella morganii S4
5 group_920 NLDBIP_12940 178173 179567 1 fumC class II fumarate hydratase Morganella morganii S4
6 group_808 LHKJJB_06580 42189 43613 -1 aspA aspartate ammonia-lyase Morganella morganii S3
7 group_920 LHKJJB_12800 178218 179612 1 fumC class II fumarate hydratase Morganella morganii S3
8 group_808 HKOGLL_04350 189774 191198 1 aspA aspartate ammonia-lyase Morganella morganii S5
9 group_920 HKOGLL_11415 178218 179612 1 fumC class II fumarate hydratase Morganella morganii S5
10 group_920 F4V73_RS05435 1154543 1155937 -1 fumC class II fumarate hydratase Morganella psychrotolerans
11 group_808 F4V73_RS11055 347901 349325 -1 aspA aspartate ammonia-lyase Morganella psychrotolerans
12 group_920 PMI_RS06255 1369935 1371332 -1 fumC class II fumarate hydratase Proteus mirabilis HI4320
13 group_808 PMI_RS12590 2789722 2791146 1 aspA aspartate ammonia-lyase Proteus mirabilis HI4320