PF09905


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF09905, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF09905
Description DNA-binding protein VF530

Occurence in the database

PF09905 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_676 FBDBKF_02510 198970 199236 1 DUF2132 domain-containing protein Morganella morganii S1
1 group_676 EHELCC_02980 586790 587056 1 DUF2132 domain-containing protein Morganella morganii S2
2 group_676 NLDBIP_00480 93080 93346 -1 DUF2132 domain-containing protein Morganella morganii S4
3 group_676 LHKJJB_01555 299339 299605 1 DUF2132 domain-containing protein Morganella morganii S3
4 group_676 HKOGLL_01595 304850 305116 1 DUF2132 domain-containing protein Morganella morganii S5
5 group_676 F4V73_RS04910 1043933 1044211 1 VF530 family protein Morganella psychrotolerans
6 group_676 PMI_RS06170 1354173 1354457 -1 VF530 family protein Proteus mirabilis HI4320