PF09003


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF09003, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF09003
Description Bacteriophage lambda integrase, Arm DNA-binding domain

Occurence in the database

PF09003 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_417 FBDBKF_18750 27491 28624 1 Integrase Morganella morganii S1
1 group_417 EHELCC_15325 27491 28624 1 Integrase Morganella morganii S2
2 group_417 NLDBIP_15855 27491 28624 1 Integrase Morganella morganii S4
3 group_417 LHKJJB_15985 88062 89195 -1 Integrase Morganella morganii S3
4 group_417 HKOGLL_15105 87274 88407 -1 Integrase Morganella morganii S5
5 group_417 PMI_RS02285 527077 528078 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
6 group_417 PMI_RS04385 984338 985471 -1 site-specific integrase Proteus mirabilis HI4320
7 group_417 PMI_RS04655 1029338 1030465 -1 phage integrase Arm DNA-binding domain-containing protein Proteus mirabilis HI4320