PF08900


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08900, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08900
Description Transcriptional regulator AcaB

Occurence in the database

PF08900 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3114 FBDBKF_19740 12066 12770 1 TIGR03761 family integrating conjugative element protein Morganella morganii S1
1 group_3593 FBDBKF_19835 11256 11795 1 TIGR03761 family integrating conjugative element protein Morganella morganii S1
2 group_3593 EHELCC_10560 157950 158489 1 TIGR03761 family integrating conjugative element protein Morganella morganii S2
3 group_3114 EHELCC_10835 205835 206539 1 TIGR03761 family integrating conjugative element protein Morganella morganii S2
4 group_3593 NLDBIP_10905 136221 136760 1 TIGR03761 family integrating conjugative element protein Morganella morganii S4
5 group_3114 NLDBIP_11180 184106 184810 1 TIGR03761 family integrating conjugative element protein Morganella morganii S4
6 group_3114 LHKJJB_10175 6718 7422 -1 TIGR03761 family integrating conjugative element protein Morganella morganii S3
7 group_3593 LHKJJB_10450 54768 55307 -1 TIGR03761 family integrating conjugative element protein Morganella morganii S3
8 group_3114 HKOGLL_16340 6727 7431 -1 TIGR03761 family integrating conjugative element protein Morganella morganii S5
9 group_3593 HKOGLL_16615 54777 55316 -1 TIGR03761 family integrating conjugative element protein Morganella morganii S5
10 group_3114 PMI_RS12970 2877013 2877717 -1 TIGR03761 family integrating conjugative element protein Proteus mirabilis HI4320