PF08482


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08482, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08482
Description ATP-dependent helicase C-terminal

Occurence in the database

PF08482 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1311 FBDBKF_08030 138014 140464 1 hrpB ATP-dependent helicase HrpB Morganella morganii S1
1 group_1311 EHELCC_13860 112208 114658 1 hrpB ATP-dependent helicase HrpB Morganella morganii S2
2 group_1311 NLDBIP_14305 133083 135533 1 hrpB ATP-dependent helicase HrpB Morganella morganii S4
3 group_1311 LHKJJB_08545 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S3
4 group_1311 HKOGLL_08095 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S5
5 group_1311 F4V73_RS12960 203262 205712 -1 hrpB ATP-dependent helicase HrpB Morganella psychrotolerans
6 group_1311 PMI_RS00975 237537 239966 1 hrpB ATP-dependent helicase HrpB Proteus mirabilis HI4320