PF08264


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08264, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08264
Description Anticodon-binding domain of tRNA ligase

Occurence in the database

PF08264 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1130 FBDBKF_06450 127533 130346 -1 ileS isoleucine--tRNA ligase Morganella morganii S1
1 group_1429 FBDBKF_08830 145011 147908 -1 valS valine--tRNA ligase Morganella morganii S1
2 group_1549 FBDBKF_10035 99878 102460 1 leuS leucine--tRNA ligase Morganella morganii S1
3 group_1549 EHELCC_04835 291843 294425 1 leuS leucine--tRNA ligase Morganella morganii S2
4 group_1130 EHELCC_09495 128105 130918 -1 ileS isoleucine--tRNA ligase Morganella morganii S2
5 group_1429 EHELCC_12695 15817 18714 1 valS valine--tRNA ligase Morganella morganii S2
6 group_1549 NLDBIP_04835 291639 294221 1 leuS leucine--tRNA ligase Morganella morganii S4
7 group_1130 NLDBIP_09875 128105 130918 -1 ileS isoleucine--tRNA ligase Morganella morganii S4
8 group_1429 NLDBIP_13035 15817 18714 1 valS valine--tRNA ligase Morganella morganii S4
9 group_1130 LHKJJB_07880 86320 89133 1 ileS isoleucine--tRNA ligase Morganella morganii S3
10 group_1429 LHKJJB_13520 143729 146626 -1 valS valine--tRNA ligase Morganella morganii S3
11 group_1549 LHKJJB_13795 41157 43739 -1 leuS leucine--tRNA ligase Morganella morganii S3
12 group_1130 HKOGLL_07430 86320 89133 1 ileS isoleucine--tRNA ligase Morganella morganii S5
13 group_1429 HKOGLL_11510 15817 18714 1 valS valine--tRNA ligase Morganella morganii S5
14 group_1549 HKOGLL_12740 100659 103241 1 leuS leucine--tRNA ligase Morganella morganii S5
15 group_1549 F4V73_RS00300 69229 71811 -1 leuS leucine--tRNA ligase Morganella psychrotolerans
16 group_1429 F4V73_RS10050 115491 118346 -1 valine--tRNA ligase Morganella psychrotolerans
17 group_1130 F4V73_RS15475 83233 86046 1 ileS isoleucine--tRNA ligase Morganella psychrotolerans
18 group_1130 PMI_RS00075 25832 28642 1 ileS isoleucine--tRNA ligase Proteus mirabilis HI4320
19 group_1549 PMI_RS02135 499556 502138 -1 leuS leucine--tRNA ligase Proteus mirabilis HI4320
20 group_1429 PMI_RS17255 3787654 3790542 -1 valine--tRNA ligase Proteus mirabilis HI4320