PF07840


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07840, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07840
Description FadR C-terminal domain

Occurence in the database

PF07840 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_989 FBDBKF_05475 105660 106373 -1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S1
1 group_989 EHELCC_12115 75121 75834 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S2
2 group_989 NLDBIP_12455 75076 75789 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S4
3 group_989 LHKJJB_12315 75121 75834 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S3
4 group_989 HKOGLL_10930 75121 75834 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S5
5 group_989 F4V73_RS03825 809307 810026 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella psychrotolerans
6 group_989 PMI_RS07320 1604205 1604924 -1 fadR fatty acid metabolism transcriptional regulator FadR Proteus mirabilis HI4320