Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF07650
Protein list: lists the 14 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
Description
| External link | PF07650 |
|---|---|
| Description | KH domain |
Occurence in the database
| PF07650 is associated with 14 different proteins |
| The 14 proteins are classified into 2 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_632 | FBDBKF_01410 | 275185 | 276093 | -1 | era | GTPase Era | Morganella morganii S1 |
| 1 | group_2426 | FBDBKF_19215 | 19337 | 20038 | -1 | rpsC | 30S ribosomal protein S3 | Morganella morganii S1 |
| 2 | group_632 | EHELCC_00135 | 32775 | 33683 | 1 | era | GTPase Era | Morganella morganii S2 |
| 3 | group_2426 | EHELCC_18960 | 19337 | 20038 | -1 | rpsC | 30S ribosomal protein S3 | Morganella morganii S2 |
| 4 | group_632 | NLDBIP_03325 | 646453 | 647361 | -1 | era | GTPase Era | Morganella morganii S4 |
| 5 | group_2426 | NLDBIP_18975 | 19337 | 20038 | -1 | rpsC | 30S ribosomal protein S3 | Morganella morganii S4 |
| 6 | group_632 | LHKJJB_04840 | 253694 | 254602 | -1 | era | GTPase Era | Morganella morganii S3 |
| 7 | group_2426 | LHKJJB_18830 | 19337 | 20038 | -1 | rpsC | 30S ribosomal protein S3 | Morganella morganii S3 |
| 8 | group_632 | HKOGLL_02205 | 32980 | 33888 | 1 | era | GTPase Era | Morganella morganii S5 |
| 9 | group_2426 | HKOGLL_18565 | 19337 | 20038 | -1 | rpsC | 30S ribosomal protein S3 | Morganella morganii S5 |
| 10 | group_632 | F4V73_RS01985 | 432440 | 433348 | 1 | era | GTPase Era | Morganella psychrotolerans |
| 11 | group_2426 | F4V73_RS18950 | 10301 | 11002 | 1 | rpsC | 30S ribosomal protein S3 | Morganella psychrotolerans |
| 12 | group_632 | PMI_RS09315 | 2033573 | 2034481 | -1 | era | GTPase Era | Proteus mirabilis HI4320 |
| 13 | group_2426 | PMI_RS16180 | 3585784 | 3586485 | 1 | rpsC | 30S ribosomal protein S3 | Proteus mirabilis HI4320 |
