PF07650

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07650, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07650
Description KH domain

Occurence in the database

PF07650 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_558 FBDBKF_01410 275185 276093 -1 era GTPase Era Morganella morganii S1
1 group_2393 FBDBKF_19215 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S1
2 group_558 EHELCC_00135 32775 33683 1 era GTPase Era Morganella morganii S2
3 group_2393 EHELCC_18960 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S2
4 group_558 NLDBIP_03325 646453 647361 -1 era GTPase Era Morganella morganii S4
5 group_2393 NLDBIP_18975 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S4
6 group_558 LHKJJB_04840 253694 254602 -1 era GTPase Era Morganella morganii S3
7 group_2393 LHKJJB_18830 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S3
8 group_558 HKOGLL_02205 32980 33888 1 era GTPase Era Morganella morganii S5
9 group_2393 HKOGLL_18565 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S5
10 group_558 F4V73_RS01985 432440 433348 1 era GTPase Era Morganella psychrotolerans
11 group_2393 F4V73_RS18950 10301 11002 1 rpsC 30S ribosomal protein S3 Morganella psychrotolerans
12 group_558 PMI_RS09315 2033573 2034481 -1 era GTPase Era Proteus mirabilis HI4320
13 group_2393 PMI_RS16180 3585784 3586485 1 rpsC 30S ribosomal protein S3 Proteus mirabilis HI4320