PF06719


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06719, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06719
Description AraC-type transcriptional regulator N-terminus

Occurence in the database

PF06719 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_500 FBDBKF_00950 173699 174586 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
1 group_500 EHELCC_00595 134282 135169 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
2 group_500 NLDBIP_02865 544967 545854 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
3 group_500 LHKJJB_04380 152208 153095 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
4 group_500 HKOGLL_02665 134487 135374 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
5 group_500 F4V73_RS06945 1439965 1440864 -1 AraC family transcriptional regulator Morganella psychrotolerans
6 group_500 F4V73_RS07325 1529150 1530061 -1 AraC family transcriptional regulator Morganella psychrotolerans